Hotels near Shelter Island San Diego

Q: What are the best hotels near Shelter Island?

Guests enjoy staying at Kona Kai San Diego , which is a hotel close to Shelter Island. Also highly rated is Bay Club Hotel & Marina , which is just steps away. The area has plenty to choose from with 10,559 lodging options including hotels and vacation rentals.

Q: What are the best luxury hotels near Shelter Island?

Pamper yourself with a stay at Westgate Hotel , which is a short 9-minute drive from Shelter Island. This hotel features a restaurant called Westgate Room, and offers an outdoor pool and a full-service spa. Another upscale property is Beach Village at The Del, LXR Hotels & Resorts , which is a short drive away.

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November 2025

December 2025

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Where to stay near Shelter Island?

Bay Club Hotel & Marina

0.7 km from Shelter Island

$139 total

includes taxes & fees

Nov 23 - Nov 24

Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

$151 total

includes taxes & fees

Dec 15 - Dec 16

Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

$155 total

includes taxes & fees

Nov 26 - Nov 27

Courtyard by Marriott San Diego Airport/Liberty Station

2.6 km from Shelter Island

$183 total

includes taxes & fees

Nov 24 - Nov 25

TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

$185 total

includes taxes & fees

Nov 24 - Nov 25

The Monsaraz San Diego, Tapestry Collection by Hilton

1.6 km from Shelter Island

$150 total

includes taxes & fees

Nov 25 - Nov 26

Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

$188 total

includes taxes & fees

Nov 26 - Nov 27

DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

$160 total

includes taxes & fees

Nov 25 - Nov 26

Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

$94 total

includes taxes & fees

Dec 7 - Dec 8

City24 Hotel Little Italy Mission Hills

5.9 km from Shelter Island

$167 total

includes taxes & fees

Nov 30 - Dec 1

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Hotels close to Shelter Island with free breakfast

Breakfast included

$155 total

includes taxes & fees

Nov 26 - Nov 27

Breakfast included

$185 total

includes taxes & fees

Nov 23 - Nov 24

Breakfast included

$150 total

includes taxes & fees

Nov 25 - Nov 26

Breakfast included

$188 total

includes taxes & fees

Nov 26 - Nov 27

Desk, blackout drapes, iron/ironing board, cribs/infant beds

Breakfast included

$113 total

includes taxes & fees

Nov 30 - Dec 1

Breakfast included

$160 total

includes taxes & fees

Nov 25 - Nov 26

Breakfast included

$94 total

includes taxes & fees

Dec 7 - Dec 8

1 bedroom, in-room safe, individually decorated, individually furnished

Breakfast included

$95 total

includes taxes & fees

Nov 24 - Nov 25

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Luxury hotels close to Shelter Island

$109 total

includes taxes & fees

Nov 27 - Nov 28

$167 total

includes taxes & fees

Nov 30 - Dec 1

$672 total

includes taxes & fees

Nov 25 - Nov 26

Luxury Suite, 2 Bedrooms, Patio, Ocean View | 1 bedroom, individually decorated, individually furnished, free WiFi

$207 total

includes taxes & fees

Dec 7 - Dec 8

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Other landmarks near Shelter Island

Sunset Cliffs Natural Park

Sunset Cliffs Natural Park is worth a pic or two when discovering Point Loma. San Diego has lots of other activities such as Port of San Diego and Petco Park.

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Breakers Beach

Whether you want to hunt for sand dollars or smell the fresh air, Breakers Beach is a spot you might want to check out, located 3.1 mi (5 km) from central San Diego. If you want to continue walking by the waves, head to Coronado Beach located nearby.

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New Americans Museum

New Americans Museum is just one of the attractions in Point Loma, San Diego so you might want to stop by during your trip. Hotels.com travelers also say the area is walkable and has lots of nice beaches. If you want to experience more of the culture San Diego has to offer, head to San Diego Zoo, San Diego Convention Center, and Marine Corps Recruit Depot.

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Frequently asked questions

What are the best hotels near Shelter Island?

Guests enjoy staying at Kona Kai San Diego, which is a hotel close to Shelter Island.
Also highly rated is Bay Club Hotel & Marina, which is just steps away.
The area has plenty to choose from with 10,559 lodging options including hotels and vacation rentals.

How much does it cost to stay in a hotel near Shelter Island?

You can find a variety of room prices on Hotels.com depending on where you plan to go and when. To see the lowest rates available, filter by your preferred criteria and sort by price.

Search for the lowest price per night from $78

What cheap hotels are close to Shelter Island?

For a wallet-friendly hotel close to Shelter Island, take a look at Best Western Plus Island Palms Hotel & Marina, which offers 2 outdoor pools, 2 hot tubs, and a pool-view restaurant.
Best Western Yacht Harbor Hotel is another low-cost option 13 minutes away on foot.

Can I find hotels close to Shelter Island that are fully refundable?

Yes, there are many hotels with refundable room rates, but be sure to check the cancellation deadline. Find refundable rates using the "Fully refundable" filter when you search for hotels.

Both The US Grant, a Luxury Collection Hotel, San Diego and Pendry San Diego are highly rated hotels near Shelter Island that offer these rates.

What are the best romantic hotels near Shelter Island?

For a romantic stay, Kona Kai San Diego offers a beach, an al fresco restaurant, and 2 outdoor pools. It's steps from Shelter Island.
Bay Club Hotel & Marina is another great choice, and it's just steps away.

What are the best hotels close to Shelter Island with free breakfast?

Begin your day with a free full breakfast at Comfort Inn San Diego Airport At The Harbor, which is a 13-minute walk from Shelter Island.
Ramada by Wyndham San Diego Airport is also a recommended place to stay with a free continental breakfast, and it's located 12 minutes away on foot.

Which hotels near Shelter Island have rooms with great views?

Enjoy rooms with ocean or resort views at Kona Kai San Diego, which is steps from Shelter Island.
Also recommended is Bay Club Hotel & Marina, which has rooms with bay views.

What are the best family hotels close to Shelter Island?

The entire family will enjoy a stay at Kona Kai San Diego which offers children's meals, a private beach, and 2 outdoor pools. Shelter Island is just steps away.
Also consider Bay Club Hotel & Marina as another great choice for your family's trip.

What are the best luxury hotels near Shelter Island?

Pamper yourself with a stay at Westgate Hotel, which is a short 9-minute drive from Shelter Island. This hotel features a restaurant called Westgate Room, and offers an outdoor pool and a full-service spa.
Another upscale property is Beach Village at The Del, LXR Hotels & Resorts, which is a short drive away.

What are the best hotels near Shelter Island with free parking?

Travelers looking to drive and park with ease should consider a stay at Ramada by Wyndham San Diego Airport, which offers free parking. You'll be a 12-minute walk from Shelter Island.
Another property that offers free parking is Best Western Yacht Harbor Hotel, which is 13 minutes away on foot.

What are the best hotels near Shelter Island with a pool?

If swimming is at the top of your list, Kona Kai San Diego has 2 outdoor pools. Shelter Island is steps from the hotel.
Another great choice for a hotel with a pool is Bay Club Hotel & Marina.

What cheap motels can I book close to Shelter Island?

To save on your stay near Shelter Island, take a look at Crown City Inn, which offers an outdoor pool and a restaurant.
El Rancho Motel is another inexpensive motel to consider in the area.

What are the best things to see and do around my hotel near Shelter Island?

Top attractions in the area near Shelter Island include San Diego Zoo, Mission Bay, and Petco Park.
Mission Beach, Balboa Park, and USS Midway Museum are other popular places in the area.

What are the best cabins close to Shelter Island?

Plum Guide - Beyond the Beach: Enjoy peace and quiet and parking when you stay at this cabin, which is a short 6-minute drive from Shelter Island.
Plum Guide - Heed The Waves: A short drive away, here's a second cabin to consider.

What are the best campsites near Shelter Island?

Roam and Board: Experience the quiet of a rural setting when you stay a short 11-minute drive from Shelter Island. This campsite offers guests an outdoor pool, pro golf lessons, and 2 outdoor tennis courts.
RV hookup space for rent: This is another option 40 minutes away by car where you can enjoy nature.

What are the best pet-friendly hotels close to Shelter Island?

Bring your beloved pet along when you stay at Kona Kai San Diego, which is steps from Shelter Island.
The Monsaraz San Diego, Tapestry Collection by Hilton is another pet-friendly option. The hotel provides food and water bowls.

Are all taxes and fees included in the prices shown on Hotels.com for hotels near Shelter Island?

Hotels.com provides upfront pricing so you can relax knowing you won't be met with surprise additional fees or taxes when you're ready to confirm your booking. From the time you start your search on Hotels.com, the price you see is what you pay. This makes it much easier to compare properties and secure our best deal for your next getaway.

Hotels near Shelter Island San Diego

Free cancellation options if plans change

Earn rewards on every night you stay

Save more with Member Prices

Check prices for these dates

Where to stay near Shelter Island?

Bay Club Hotel & Marina

Hotels close to Shelter Island with free breakfast

Hampton Inn & Suites San Diego Airport Liberty Station

Luxury hotels close to Shelter Island

Sea Harbor Hotel

Other landmarks near Shelter Island

Sunset Cliffs Natural Park

Breakers Beach

Frequently asked questions

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