A large body of water surrounded by dense forests and a winding road.

Hotels in Henderson Harbor

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Where to stay in Henderson Harbor?

A building with a balcony overlooking a body of water, surrounded by greenery.

A hotel room with two beds, a ceiling fan, wall-mounted lamps, and framed pictures.

A bar area with a long counter, multiple stools, and shelves stocked with bottles and glasses.

A spacious living area with a wooden floor, a sofa, a dining table, and a bar area with a counter and shelves.

1. The GillHouse

Henderson Harbor

$125

$139 total

includes taxes & fees

Oct 18 - Oct 19

A four-poster bed with a canopy, a bedside table with a lamp, a chair, and a television on a stand.

A marina with multiple boats docked, surrounded by trees and a clear sky.

A building with a flat roof and a parking lot in front.

A hallway with a painting of a lighthouse, two upholstered chairs, a wooden console table with a vase of flowers, and a mirror on the wall.

2. Harbor House Inn

Sackets Harbor

$180

$210 total

includes taxes & fees

Nov 15 - Nov 16

A Holiday Inn Express building with a covered entrance, a landscaped garden, and a parking area.

A modern breakfast bar with a coffee machine, cereal, and fruit options.

A hotel room with a bed, a sitting area, a bathroom with a bathtub, and a desk with a lamp.

An indoor swimming pool with lounge chairs and a clock on the wall.

3. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

$113

$125 total

includes taxes & fees

Nov 14 - Nov 15

A Ramada hotel entrance with a clear sky, a red awning, and two potted plants.

A lobby with a reception desk, seating area, and a large potted plant.

A gazebo with a white railing and a tiled roof, surrounded by grass and potted plants.

A cozy room with a stone fireplace, two floral armchairs, a small wooden table, and a large window offering a view of the outside.

4. Ramada by Wyndham Watertown/Thousand Islands NY

Watertown

$85

$94 total

includes taxes & fees

Nov 5 - Nov 6

A hotel lobby with a bar area, seating arrangements, and a television mounted on the wall.

A hotel room with a large bed, a desk with a lamp, a chair, and a view of the outdoors.

A gym with treadmills, elliptical machines, and free weights.

5. Hampton Inn Watertown

Watertown

$105

$116 total

includes taxes & fees

Oct 29 - Oct 30

A hotel room with a bed, a television, a desk, and a window.

A room with a round table, four orange chairs, and three abstract paintings on the wall.

A modern interior with tables and chairs, a ceiling with recessed lighting, and a wall with abstract art.

A hotel entrance with a sign reading 'spark by Hilton' and '300 Washington Street'.

6. Spark by Hilton Watertown

Watertown

$81

$90 total

includes taxes & fees

Oct 29 - Oct 30

A hotel room with a large bed, a nightstand, a lamp, a chair, and a window with curtains.

A spacious lobby with a fireplace, blue armchairs, and a chandelier.

An indoor swimming pool with clear blue water, lounge chairs, and a sunbed area.

A Comfort Inn & Suites hotel with a modern design, featuring a central entrance, multiple floors, and a parking lot.

7. Comfort Inn & Suites Watertown - 1000 Islands

Watertown

$102

$113 total

includes taxes & fees

Nov 8 - Nov 9

A gazebo with a stone fire pit in the center, surrounded by outdoor seating and a brick pathway.

A spacious lobby with high ceilings, large windows, and modern furniture.

A spacious lobby with a patterned carpet, wooden beams, and a reception desk.

A hotel pool area with multiple hot tubs, a reception desk, and seating areas.

8. Hilton Garden Inn Watertown/Thousand Islands

Watertown

$143

$159 total

includes taxes & fees

Nov 14 - Nov 15

A vending machine with various snacks and drinks.

A hotel room with a bed, a sofa, a desk, a lamp, a window with curtains, and a bathroom with a sink and mirror.

A building entrance with a covered walkway, double doors, and a stone wall on one side.

9. Travel Inn

Watertown

$69

$77 total

includes taxes & fees

Oct 18 - Oct 19

A hotel lobby with a stone wall, green upholstered chairs, a round white table, and a beige sofa.

A reception area with two reception desks, a wall with a tree branch pattern, and a seating area with tables and chairs.

A multi-story hotel with a prominent entrance, a covered lobby area, and a well-lit facade.

A modern dining area with multiple tables and chairs, pendant lighting, and artwork on the walls.

10. Fairfield Inn & Suites Watertown Thousand Islands

Watertown

$125

$139 total

includes taxes & fees

Nov 5 - Nov 6

A room with a bed, a chair, a table, and a lamp.

A hotel room with a bed, a desk, a chair, and a small table.

A motel with a 'Budget' sign, a visible office, and several parked cars.

A hotel room with two beds, a desk, a chair, a lamp, and a window with blinds.

11. Allen's Budget Motel

Watertown

$60

$67 total

includes taxes & fees

Oct 17 - Oct 18

A hotel room with a bed, a bathroom with a bathtub, and a picture on the wall.

A Days Inn hotel with a two-story structure, a covered entrance, and a parking lot.

A pair of white front-loading washers in a laundry room with a tiled floor.

A breakfast area with wooden furniture, a coffee machine, and a sign that reads "Daybreak Breakfast".

12. Days Inn by Wyndham Watertown Fort Drum

Calcium

$67

$74 total

includes taxes & fees

Nov 5 - Nov 6

A modern living room with a flat-screen TV, comfortable seating, and a fireplace.

A reception area with a marble counter, pendant lighting, and a tiled floor.

A modern kitchen area with a coffee machine, a fresh juice dispenser, and a breakfast bar.

A hotel room with a bed, a nightstand, a wall-mounted lamp, and a window with red curtains.

13. Quality Inn & Suites Watertown Fort Drum

Calcium

$63

$70 total

includes taxes & fees

Nov 5 - Nov 6

A modern bedroom with a bed, bedside lamp, air conditioning unit, and a mounted TV displaying a streaming service interface.

A reception desk with a 'Welcome Centre' sign, a window with blinds, and a tiled floor.

A building with a red exterior and a covered parking area.

A Nest Inn sign, a parking area, and a building with a red exterior.

14. Nest Inn

Watertown

$56

$68 total

includes taxes & fees

Oct 18 - Oct 19

An indoor swimming pool with clear water, surrounded by lounge chairs and tables, and large windows allowing natural light.

A building with a sign reading "Adirondack Efficiencies."

A wooden desk with a flat-screen TV, a mirror, and a coffee maker.

A hotel room with two beds, red walls, and a nightstand with a lamp.

15. Adirondack Efficiencies Watertown

Watertown

$70

$78 total

includes taxes & fees

Nov 1 - Nov 2

A wooden exterior door with a glass panel, a stone step, and a metal doormat.

A staircase with wooden handrails leading to an upper floor.

A hotel room with two beds, a nightstand with a lamp, and two framed pictures on the wall.

A building with a sign reading "ROYAL INN" and a car parked in front.

16. Royal Inn Motel

Watertown

$62

$69 total

includes taxes & fees

Oct 17 - Oct 18

A hotel room with two beds, a desk with a coffee maker, a TV, and a view of trees through the window.

A modern living room with a flat-screen TV, a wooden coffee table, a sofa, a bookshelf, and a patterned rug.

A gym with treadmills, a weight machine, and a red exercise ball.

A hotel with a prominent "CANDLEWOOD SUITES" sign, a parking lot, and a building with a mix of red and blue facades.

17. Candlewood Suites Watertown Fort Drum by IHG

Evans Mills

$101

$118 total

includes taxes & fees

Oct 18 - Oct 19

A wooden deck with a table and chairs, overlooking a lake with boats and a dock.

A bedroom with a wooden ceiling, large windows, a bed with patterned bedding, and a white headboard.

A hallway with a white door, wooden flooring, and an archway leading to a dining area.

A spacious living area with a wooden floor, a sofa, a chair, and a dining table. There is a large window with a view of a snowy landscape.

18. Family Cottage on Chaumont Bay, Walk to Downtown

Chaumont

$224

$452 total

includes taxes & fees

Oct 18 - Oct 19

View all properties

Go beyond your typical stay in Henderson Harbor

Top landmarks in Henderson Harbor

Saiff Charters

Saiff Charters is 0.3 mi (0.5 km) from central Henderson Harbor, why not stop by during your stay.

See properties

Learn more about Henderson Harbor

Henderson Harbor is well-known for its attractions such as Lake Ontario and Saiff Charters.

See all hotels in Henderson Harbor

Check out reviews of Henderson Harbor hotels guests love

The GillHouse

Henderson Harbor

10/10 Exceptional

Travis

Harbor House Inn

Sackets Harbor

10/10 Exceptional

Upon arrival our 2 rooms were upgraded from the 3rd floor to 2nd (main) floor and a refrigerator was delivered for our convenience. We were pleasantly surprised at the quality and quantity of breakfast items we discovered both mornings; including fresh apricots! Would highly recommend the Inn and the variety of delightful restaurants within walking distance. Our favorites, as always, are Tin Pan Galley and Good Fellos!

Denise

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

10/10 Exceptional

Lisa

Hampton Inn Watertown

Watertown

10/10 Exceptional

Charlene

Hilton Garden Inn Watertown/Thousand Islands

Watertown

10/10 Exceptional

We enjoyed our stay at Hilton Garden in, it's basically just off the highway in the middle of a strip mall but you wouldn't know this once you are inside. It's a little oasis in a sea of concrete. The rooms were lovely and the beds very comfortable. The staff were very helpful at the front desk and it was a bonus to have a small pool and gym. We were especially impressed by one staff member (I wish I could remember his name) who accommodated our needs at the bar after 9pm. It's a great base to...

TazAid

Comfort Inn & Suites Watertown - 1000 Islands

Watertown

10/10 Exceptional

Samuel

Fairfield Inn & Suites Watertown Thousand Islands

Watertown

10/10 Exceptional

paula

Allen's Budget Motel

Watertown

10/10 Exceptional

Pat

Days Inn by Wyndham Watertown Fort Drum

Calcium

10/10 Exceptional

James

Quality Inn & Suites Watertown Fort Drum

Calcium

10/10 Exceptional

Candlewood Suites Watertown Fort Drum by IHG

Evans Mills

10/10 Exceptional

Stephen

Royal Inn Motel

Watertown

10/10 Exceptional

Steven

Frequently Asked Questions

What accommodations do travelers like in Henderson Harbor?

Guests like The GillHouse.

Can I book refundable accommodations in Henderson Harbor?

If you want the flexibility to change your plans to Henderson Harbor, most hotels provide refundable* bookable rates. You can see these accommodations by searching our site and using the "fully refundable" filter to narrow down the results.

Where should I stay in Henderson Harbor if I'm looking for an affordable accommodation?

An inexpensive option worth considering is The GillHouse.

What will the weather in Henderson Harbor be like during my vacation?

July and August are typically the warmest months in Henderson Harbor when the average temp is 66°F. January and February are the coldest months when the average temperature is 27°F. October and July are the months with the most rain.

Why should I book my Henderson Harbor hotel with Hotels.com?

There are lots of reasons to book your Henderson Harbor trip with us: our free cancellations on selected hotels* gives you flexibility, and with One Key™, our rewards program, you will be able to earn and use OneKeyCash™** on all eligible bookings such as hotels, car rentals, flights, vacation rentals and more on Hotels.com, Expedia and Vrbo.