Hotels in Isahaya

Free cancellation options if plans change

Earn rewards on every night you stay

Save more with Member Prices

Check prices for these dates

Tonight
Oct 30 - Oct 31
Tomorrow
Oct 31 - Nov 1
This weekend
Oct 30 - Nov 1
Next weekend
Nov 6 - Nov 8

Where to stay in Isahaya?

A hotel entrance with a modern design, featuring a glass door, a signboard, and a well-lit interior visible through the glass.

1. Super Hotel Nagasaki Isahaya Natural Hot Spring

Super Hotel Nagasaki Isahaya Natural Hot Spring
3.0 star property
Isahaya
10.0 out of 10, Exceptional, (1 review)
The price is $65
$71 total
Nov 29 - Nov 30
Super Hotel Nagasaki Isahaya Natural Hot Spring
A multi-story building with a flat facade, balconies, and a parking lot in front.

2. Tennen Onsen Hotel Kinshai

Tennen Onsen Hotel Kinshai
2.0 star property
Isahaya
7.8 out of 10, Good, (40 reviews)
Rejuvenate in Isahaya's natural hot springs while enjoying free WiFi and parking. Located near historic Megane Bridge and Moriyama Sports Community Square, this tranquil retreat offers convenient laundry facilities and easy access to Urakami station.
The price is $57
$63 total
Nov 1 - Nov 2
Tennen Onsen Hotel Kinshai
A traditional Japanese-style hotel room with tatami flooring, two beds, a television, and a view of greenery through large windows.

3. Hotel Flags Ishihaya Nagasaki

Hotel Flags Ishihaya Nagasaki
3.0 star property
Isahaya
7.8 out of 10, Good, (78 reviews)
Unwind at this tranquil hotel in Isahaya with complimentary WiFi and self parking. Just minutes from historic Megane Bridge and serene Isahaya Park, it provides comfortable rooms and breakfast options for explorers of Nagasaki.
The price is $49
$54 total
Nov 29 - Nov 30
Hotel Flags Ishihaya Nagasaki
A multi-story hotel with a modern design, featuring a prominent entrance and a sign indicating it is a hotel.

4. New Station Hotel Premiere

New Station Hotel Premiere
3.0 star property
Isahaya
7.8 out of 10, Good, (191 reviews)
Refresh at this Isahaya hotel offering complimentary WiFi and parking. Explore nearby attractions including Isahaya Park and the historic Megane Bridge. Breakfast is available each morning to fuel your Nagasaki adventures.
The price is $56
$62 total
Nov 19 - Nov 20
New Station Hotel Premiere
A modern waiting area with two sofas, a coffee table, and a reception desk with computers.

5. New Station Hotel

New Station Hotel
3.0 star property
Isahaya
7.4 out of 10, Good, (126 reviews)
Unwind in this well-appointed hotel near Isahaya Park and Megane Bridge. Take advantage of complimentary WiFi and parking while enjoying rooms with contemporary amenities. Fellow guests praise the excellent property condition and convenient location.
The price is $60
$67 total
Nov 3 - Nov 4
New Station Hotel
A room with a large window offering a view of a lush green landscape, a wooden table with a vase, and a curtain partially drawn.

6. Morino Villa & Resort

Morino Villa & Resort
3.0 star property
Isahaya
8.8 out of 10, Excellent, (15 reviews)
This seaside hotel offers free self parking and convenient WiFi access. Located near Moriyama Folk Museum and Aino Observation Deck, guests can explore local attractions before returning for a restful night in comfortable accommodations.
The price is $80
$88 total
Nov 3 - Nov 4
Morino Villa & Resort
A modern building entrance with a set of stairs leading to a glass door entrance.

7. Isahaya Terminal Hotel

Isahaya Terminal Hotel
2.5 star property
Isahaya
6.6 out of 10, Good, (258 reviews)
Located near Isahaya Park and the historic Megane Bridge, this hotel provides complimentary continental breakfast served each morning. With free WiFi throughout and parking available, it offers easy access to local attractions and is a short drive from Nagasaki Airport.
The price is $67
$74 total
Nov 9 - Nov 10
Isahaya Terminal Hotel
Property grounds

8. KIKITSU Station Hotel

KIKITSU Station Hotel
3.0 star property
Isahaya
8.6 out of 10, Excellent, (190 reviews)
Located near Isahaya Park and Tsukinooka Park, this convenient hotel offers free WiFi and parking for travelers. Breakfast options make mornings easy, while proximity to KIKITSU station ensures smooth journeys throughout Nagasaki prefecture.
The price is $55
$61 total
Nov 16 - Nov 17
KIKITSU Station Hotel
A hotel lobby with a reception desk, seating area, and large windows.

9. Hotel Route-Inn Isahaya Inter

Hotel Route-Inn Isahaya Inter
3.0 star property
Isahaya
8.2 out of 10, Very good, (303 reviews)
Tranquil lodging near Isahaya Park and the historic Megane Bridge. Relax with complimentary WiFi, free parking, and rejuvenating massage services. The on-site restaurant offers flavorful meals after a day of exploring, while the 24-hour front desk ensures attentive service.
The price is $77
$85 total
Nov 29 - Nov 30
Hotel Route-Inn Isahaya Inter
A modern reception area with a glass partition, a reception desk, seating area, and large windows.

10. Omura Station Hotel Nagasaki Airport

Omura Station Hotel Nagasaki Airport
3.0 star property
Omura
8.6 out of 10, Excellent, (285 reviews)
Wake up refreshed at this convenient hotel near Nagasaki Airport. Enjoy complimentary WiFi and parking while exploring nearby Omura Bay and Former Entsuji Temple Garden. Just a short drive from Ōmura-Sharyokichi Station.
The price is $64
$70 total
Nov 5 - Nov 6
Omura Station Hotel Nagasaki Airport
A spacious lobby with a curved staircase, seating areas, and a reception desk.

11. HOTEL LiVEMAX Nagasaki Airport

HOTEL LiVEMAX Nagasaki Airport
3.5 star property
Omura
7.6 out of 10, Good, (39 reviews)
The price is $44
$53 total
Nov 30 - Dec 1
HOTEL LiVEMAX Nagasaki Airport
A Comfort Inn hotel with a modern design, featuring a flat facade, multiple windows, and a covered entrance.

12. Comfort Inn Nagasaki Airport

Comfort Inn Nagasaki Airport
3.0 star property
Omura
8.4 out of 10, Very good, (452 reviews)
Immerse in Omura's tranquil ambiance at this well-maintained hotel offering complimentary WiFi and parking. Explore nearby Omura Bay and Former Entsuji Temple Garden, then return for a restful night just 4 minutes from Nagasaki Airport.
The price is $46
$51 total
Nov 8 - Nov 9
Comfort Inn Nagasaki Airport
The exterior of the Omura Central Hotel with a modern design, featuring a glass entrance and a well-lit facade.

13. Omura Central Hotel

Omura Central Hotel
3.0 star property
Omura
7.6 out of 10, Good, (83 reviews)
Immerse yourself in Japanese hospitality at this centrally located hotel near Former Entsuji Temple Garden. Wake up to a complimentary buffet breakfast before exploring Omura Bay. Free WiFi and parking make for a convenient, hassle-free stay close to Nagasaki Airport.
The price is $82
$91 total
Nov 29 - Nov 30
Omura Central Hotel
A view of a coastal cityscape with a prominent building and a parking lot.

14. Jisco Hotel Obama Onsen

Jisco Hotel Obama Onsen
2.0 star property
Obama Onsen
8.4 out of 10, Very good, (225 reviews)
Immerse yourself in tranquility at this Obama Onsen hotel with rejuvenating hot springs and in-room massage services. Explore nearby Tokenyama Park and Oshidori Pond before returning to unwind with complimentary WiFi.
The price is $56
$62 total
Nov 29 - Nov 30
Jisco Hotel Obama Onsen
A spacious lobby with a polished marble floor, a central seating area, and a high ceiling with recessed lighting.

15. THE GLOBAL VIEW Nagasaki

THE GLOBAL VIEW Nagasaki
4.0 star property
Nagasaki
9.4 out of 10, Exceptional, (655 reviews)
Embrace comfort at this contemporary hotel with 2 restaurants and clean, thoughtfully appointed rooms. Located near Peace Stadium and Oka Masaharu Memorial Nagasaki Peace Museum, you're perfectly positioned for exploring this historic city.
The price is $65
$71 total
Nov 23 - Nov 24
THE GLOBAL VIEW Nagasaki
A hotel room with a bed, a desk with a computer, a television, and a microwave.

16. HOTEL R9 The Yard Omura

HOTEL R9 The Yard Omura
2.0 star property
Omura
8.8 out of 10, Excellent, (40 reviews)
Wake up in Omura with easy airport access just 12 minutes away. This hotel offers complimentary WiFi and parking, plus convenient laundry facilities. Explore nearby Urami Waterfall Shizenkaen or take a 17-minute stroll to Ōmura-Sharyokichi Station.
The price is $43
$48 total
Nov 29 - Nov 30
HOTEL R9 The Yard Omura
A modern hotel lobby with white leather sofas, a coffee table, and potted plants.

17. Omura Station Hotel

Omura Station Hotel
3.0 star property
Omura
8.2 out of 10, Very good, (152 reviews)
Wake up refreshed at this hotel near Omura Station with free WiFi and parking. Explore nearby Former Entsuji Temple Garden and Omura Bay, then return for a comfortable stay. Just 7 minutes from Nagasaki Airport for easy connections.
The price is $62
$69 total
Nov 29 - Nov 30
Omura Station Hotel
A modern building with a flat roof, large windows, and a seating area with chairs and tables.

18. Hoshino Resorts KAI Unzen

Hoshino Resorts KAI Unzen
3.0 star property
Unzen
9.6 out of 10, Exceptional, (68 reviews)
Experience tranquil Japanese hospitality near Unzen Jigoku Hell and Toy Museum. This hotel offers complimentary Japanese breakfast, WiFi, and parking. Enjoy natural hot springs after exploring nearby attractions, with Shimabaragaiko station just 29 minutes away.
The price is $404
$447 total
Nov 13 - Nov 14
Hoshino Resorts KAI Unzen
A room with a view of a lake and forest.

19. Unzen Azumaen

Unzen Azumaen
3.5 star property
Unzen
8.6 out of 10, Excellent, (115 reviews)
Immerse in traditional Japanese hospitality at this serene ryokan featuring rejuvenating massage services and a welcoming café. Located near Unzen Toy Museum and Oshidori Pond, enjoy free WiFi and parking while exploring local volcanic landscapes.
The price is $305
$371 total
Nov 2 - Nov 3
Unzen Azumaen
A modern hotel room with a large window, a flat-screen TV, a wooden bar area, and a city view.

20. FAV LUX NAGASAKI

FAV LUX NAGASAKI
3.5 star property
Nagasaki
9.4 out of 10, Exceptional, (384 reviews)
Unwind at this charming spot with easy access to Gunkanjima Digital Museum. The on-site café serves delicious western-style breakfast, while apartments feature full kitchens and modern comforts. The helpful staff and sauna add to your Nagasaki experience.
The price is $79
$87 total
Nov 3 - Nov 4
FAV LUX NAGASAKI
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Go beyond your typical stay in Isahaya

hot tub image
Hot tub
Hot tub
spa image
Spa
Spa

When is the best time to visit Isahaya?

Our prices for hotels in Isahaya are cheapest in April

Price trends for hotels in Isahaya

Pricing is based on two traveler single night rates
View properties in October
Currently viewing crowd sizes and weather for October.

October

High 23°C / low 17°C. Sunny most days.
23°
weather_sun
October, no crowd data, average high temperature 23 degrees Celsius, average low temperature 17 degrees Celsius. Sunny most days.
17°
18°
weather_sun
November, no crowd data, average high temperature 18 degrees Celsius, average low temperature 12 degrees Celsius. Sunny most days.
12°
12°
weather_sun
December, no crowd data, average high temperature 12 degrees Celsius, average low temperature 7 degrees Celsius. Sunny most days.
7°
10°
weather_sun
January, no crowd data, average high temperature 10 degrees Celsius, average low temperature 5 degrees Celsius. Sunny most days.
5°
11°
weather_sun
February, no crowd data, average high temperature 11 degrees Celsius, average low temperature 5 degrees Celsius. Sunny most days.
5°
15°
weather_sun
March, no crowd data, average high temperature 15 degrees Celsius, average low temperature 8 degrees Celsius. Sunny most days.
8°
19°
weather_sun
April, no crowd data, average high temperature 19 degrees Celsius, average low temperature 11 degrees Celsius. Sunny most days.
11°
23°
weather_partly_sunny
May, no crowd data, average high temperature 23 degrees Celsius, average low temperature 16 degrees Celsius. Partly sunny.
16°
26°
weather_sleet
June, no crowd data, average high temperature 26 degrees Celsius, average low temperature 20 degrees Celsius. Rainy most days.
20°
29°
weather_sleet
July, no crowd data, average high temperature 29 degrees Celsius, average low temperature 24 degrees Celsius. Rainy most days.
24°
31°
weather_sleet
August, no crowd data, average high temperature 31 degrees Celsius, average low temperature 25 degrees Celsius. Rainy most days.
25°
28°
weather_partly_sunny
September, no crowd data, average high temperature 28 degrees Celsius, average low temperature 22 degrees Celsius. Partly sunny.
22°
Monthly weather averages (˚C)

Top landmarks in Isahaya

Isahaya Park

8.4/10 (11 reviews)
Isahaya Park is 1.5 mi (2.4 km) from central Isahaya, why not stop by during your stay. Want to stretch your legs some more? Head to Tsukinooka Park, located nearby.
See properties

Learn more about Isahaya

Isahaya is well-known for its attractions such as Isahaya Park and Konagai Culture Hall.

See all hotels in Isahaya
A stone bridge over a calm river with lush greenery and clear blue sky.

Check out reviews of Isahaya hotels guests love

A room with a large window offering a view of a lush green landscape, a wooden table with a vase, and a curtain partially drawn.
Morino Villa & Resort

Morino Villa & Resort

Morino Villa & Resort
Isahaya

10/10 Exceptional

Very Nice Clean Room and Outstanding Customer Service. Love staying, peaceful and quite!
United States
Maximo
Reviewed June 28, 2026
Morino Villa & Resort

Frequently Asked Questions

What accommodations do travelers recommend in Isahaya?

Guests like New Station Hotel Premiere and Tennen Onsen Hotel Kinshai.

Can I book a refundable hotel in Isahaya?

If you're looking for the flexibility to change your travel plans to Isahaya, most hotels offer refundable* rates you can book. You can see these accommodations by searching our site and using the "fully refundable" filter to narrow the results down.

What will the weather in Isahaya be like during my visit?

August and July are typically the warmest months in Isahaya when the average temp is 77°F. January and February are the coldest months when the average temperature is 48°F. June and July are the months with the most rain.

Why should I book my Isahaya hotel through Hotels.com?

There are lots of reasons to book your Isahaya trip with us: our free cancellations on selected hotels* gives you flexibility, and with One Key™, our rewards program, you will be able to earn and use OneKeyCash™** on all eligible bookings such as hotels, car rentals, flights, vacation rentals and more on Hotels.com, Expedia and Vrbo.