Hotels in Henderson Harbor

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Where to stay in Henderson Harbor?

A building with a balcony overlooking a body of water, surrounded by greenery.

A hotel room with two beds, a ceiling fan, wall-mounted lamps, and framed pictures.

A building with a sign reading "GILLHOUSE" and a stone wall to the left.

A bar area with a long counter, multiple stools, and shelves stocked with bottles and glasses.

1. The GillHouse

Henderson Harbor

$125

$139 total

includes taxes & fees

Oct 11 - Oct 12

A four-poster bed with a canopy, a bedside table with a lamp, a chair, and a television on a stand.

A marina with multiple boats docked, surrounded by trees and a clear sky.

A hallway with a painting of a lighthouse, two upholstered chairs, a wooden console table with a vase of flowers, and a mirror on the wall.

A building with a flat roof and a parking lot in front.

2. Harbor House Inn

Sackets Harbor

$183

$213 total

includes taxes & fees

Oct 4 - Oct 5

A bathroom with a sink, mirror, and stacked towels on a wall.

A hotel room with a bed, a TV, a desk, and two lamps.

A Ramada hotel entrance with a clear sky, a red awning, and two potted plants.

A cozy room with a stone fireplace, two floral armchairs, a small wooden table, and a large window offering a view of the outside.

3. Ramada by Wyndham Watertown/Thousand Islands NY

Watertown

$57

$63 total

includes taxes & fees

Oct 30 - Oct 31

A gazebo with a stone fire pit in the center, surrounded by outdoor seating and a brick pathway.

A spacious lobby with high ceilings, large windows, and modern furniture.

A covered outdoor seating area with stone pillars, a high-roofed pavilion, and a view of the Hilton Garden Inn hotel in the background.

A spacious lobby with a patterned carpet, wooden beams, and a reception desk.

4. Hilton Garden Inn Watertown/Thousand Islands

Watertown

$135

$150 total

includes taxes & fees

Oct 17 - Oct 18

A hotel lobby with a bar area, seating arrangements, and a television mounted on the wall.

An indoor swimming pool with clear lane markings, a no diving sign, and a lifeguard chair.

A hotel room with a large bed, a desk with a lamp, a chair, and a view of the outdoors.

A gym with treadmills, elliptical machines, and free weights.

5. Hampton Inn Watertown

Watertown

$98

$108 total

includes taxes & fees

Oct 30 - Oct 31

A hotel room with a large bed, a nightstand, a lamp, a chair, and a window with curtains.

A Comfort Inn & Suites hotel with a modern design, featuring a central entrance, multiple floors, and a parking lot.

A hotel kitchen with wooden cabinets, granite countertops, and a coffee station with various coffee makers and containers.

A spacious lobby with a fireplace, blue armchairs, and a chandelier.

6. Comfort Inn & Suites Watertown - 1000 Islands

Watertown

$96

$107 total

includes taxes & fees

Oct 25 - Oct 26

A sign with the text 'It only takes a spark' and a yellow star, a glass door leading to an interior space, and a yellow chair.

A modern interior with tables and chairs, a ceiling with recessed lighting, and a wall with abstract art.

A hotel room with a bed, a television, a desk, and a window.

A reception desk with a modern design, featuring a wooden finish and a large abstract painting above it.

7. Spark by Hilton Watertown

Watertown

$85

$95 total

includes taxes & fees

Oct 14 - Oct 15

A building entrance with a covered walkway, double doors, and a stone wall on one side.

A vending machine with various snacks and drinks.

A lobby with a reception desk, a red vending machine, a black leather couch, and a patterned floor.

8. Travel Inn

Watertown

$62

$69 total

includes taxes & fees

Oct 11 - Oct 12

A hotel lobby with a stone wall, green upholstered chairs, a round white table, and a beige sofa.

A modern dining area with multiple tables and chairs, pendant lighting, and artwork on the walls.

A multi-story hotel with a prominent entrance, a covered lobby area, and a well-lit facade.

A swimming pool with a changing room, sun loungers, and a hot tub area.

9. Fairfield Inn & Suites Watertown Thousand Islands

Watertown

$125

$139 total

includes taxes & fees

Nov 1 - Nov 2

A room with a bed, a chair, a table, and a lamp.

A motel with a 'Budget' sign, a visible office, and several parked cars.

A hotel room with a bed, a desk, a chair, and a small table.

A bathroom with a bathtub, a shower, and a toilet.

10. Allen's Budget Motel

Watertown

$60

$67 total

includes taxes & fees

Oct 5 - Oct 6

A hotel room with a bed, a bathroom with a bathtub, and a picture on the wall.

A Days Inn hotel with a two-story structure, a covered entrance, and a parking lot.

A pair of white front-loading washers in a laundry room with a tiled floor.

A breakfast area with wooden furniture, a coffee machine, and a sign that reads "Daybreak Breakfast".

11. Days Inn by Wyndham Watertown Fort Drum

Calcium

$68

$76 total

includes taxes & fees

Oct 18 - Oct 19

A modern living room with a flat-screen TV, comfortable seating, and a fireplace.

A modern kitchen area with a coffee machine, a fresh juice dispenser, and a breakfast bar.

A modern building with a covered entrance, multiple windows, and a parking lot.

A reception area with a marble counter, pendant lighting, and a tiled floor.

12. Quality Inn & Suites Watertown Fort Drum

Calcium

$63

$70 total

includes taxes & fees

Nov 1 - Nov 2

An indoor swimming pool with clear water, surrounded by lounge chairs and tables, and large windows allowing natural light.

A hotel room with two beds, red walls, and a nightstand with a lamp.

A wooden desk with a flat-screen TV, a mirror, and a coffee maker.

A building with a sign reading "Adirondack Efficiencies."

13. Adirondack Efficiencies Watertown

Watertown

$70

$78 total

includes taxes & fees

Nov 1 - Nov 2

A modern bedroom with a bed, bedside lamp, air conditioning unit, and a mounted TV displaying a streaming service interface.

A building with a red exterior and a covered parking area.

A reception desk with a 'Welcome Centre' sign, a window with blinds, and a tiled floor.

A bathroom with a white sink, a modern faucet, and a blue soap dispenser.

14. Nest Inn

Watertown

$62

$74 total

includes taxes & fees

Oct 4 - Oct 5

A wooden exterior door with a glass panel, a stone step, and a metal doormat.

A building with a sign reading "ROYAL INN" and a car parked in front.

A hotel room with two beds, a nightstand with a lamp, and two framed pictures on the wall.

A staircase with wooden handrails leading to an upper floor.

15. Royal Inn Motel

Watertown

$62

$69 total

includes taxes & fees

Oct 4 - Oct 5

A wooden deck with a table and chairs, overlooking a lake with boats and a dock.

A wooden dock extending into a body of water, a staircase leading to a house, and a covered outdoor area with an umbrella.

A spacious living area with a wooden floor, a sofa, a chair, and a dining table. There is a large window with a view of a snowy landscape.

A hallway with a white door, wooden flooring, and an archway leading to a dining area.

16. Family Cottage on Chaumont Bay, Walk to Downtown

Chaumont

$224

$452 total

includes taxes & fees

Oct 4 - Oct 5

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Go beyond your typical stay in Henderson Harbor

Pet friendly

Pool

Family friendly

Top landmarks in Henderson Harbor

Saiff Charters

Saiff Charters is 0.3 mi (0.5 km) from central Henderson Harbor, why not stop by during your stay.

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Learn more about Henderson Harbor

Henderson Harbor is well-known for its attractions such as Lake Ontario and Saiff Charters.

See all hotels in Henderson Harbor

A large body of water surrounded by dense forests and a winding road.

Check out reviews of Henderson Harbor hotels guests love

Comfort Inn & Suites Watertown - 1000 Islands

10/10 Excellent

"Our suite was nice and much larger than expected. The only ding I would give the property is the iced water in the lobby had lemon flavored syrup in it. So it was like watered down lemonade and not expected. Just iced water with lemon would have been nice."

Allen's Budget Motel

10/10 Excellent

"Everything was very clean"

Quality Inn & Suites Watertown Fort Drum

10/10 Excellent

"Thank you."

Fairfield Inn & Suites Watertown Thousand Islands

10/10 Excellent

"Always a good place to stay."

Adirondack Efficiencies Watertown

10/10 Excellent

"I love the staff. I have stayed there a couple times this year. Great place to be."

Nest Inn

10/10 Excellent

"Nice clean rooms. The staff are very helpful and friendly. Nice and approachable."

The GillHouse

10/10 Excellent

"We stayed at Gill House for a wedding. The accommodations were perfect and the location"

Hilton Garden Inn Watertown/Thousand Islands

10/10 Excellent

"Wonderful stay!!!"

Royal Inn Motel

10/10 Excellent

"Friendly and clean"

Frequently asked questions

What accommodations do travelers like in Henderson Harbor?

Guests like The GillHouse.

Can I book refundable accommodations in Henderson Harbor?

If you want the flexibility to change your plans to Henderson Harbor, most hotels provide refundable* bookable rates. You can see these accommodations by searching our site and using the "fully refundable" filter to narrow down the results.

Where should I stay in Henderson Harbor if I'm looking for an affordable accommodation?

An inexpensive option worth considering is The GillHouse.

What will the weather in Henderson Harbor be like during my vacation?

July and August are typically the warmest months in Henderson Harbor when the average temp is 66°F. January and February are the coldest months when the average temperature is 27°F. October and July are the months with the most rain.

Why should I book my Henderson Harbor hotel with Hotels.com?

There are lots of reasons to book your Henderson Harbor trip with us: our free cancellations on selected hotels gives you flexibility, and with One Key™, our rewards program, you will be able to earn and use OneKeyCash™* on all eligible bookings such as hotels, car rentals, flights, vacation rentals and more on Hotels.com, Expedia and Vrbo.

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